ゲノム解読論文まとめ（４）

脊椎動物ゲノム特集。

The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage
Shaffer HB, Minx P, Warren DE, Shedlock AM, Thomson RC, Valenzuela N, Abramyan J, Amemiya CT, Badenhorst D, Biggar KK, Borchert GM, Botka CW, Bowden RM, Braun EL, Bronikowski AM, Bruneau BG, Buck LT, Capel B, Castoe TA, Czerwinski M, Delehaunty KD, Edwards SV, Fronick CC, Fujita MK, Fulton L, Graves TA, Green RE, Haerty W, Hariharan R, Hernandez O, Hillier LW, Holloway AK, Janes D, Janzen FJ, Kandoth C, Kong L, de Koning AJ, Li Y, Literman R, McGaugh SE, Mork L, O'Laughlin M, Paitz RT, Pollock DD, Ponting CP, Radhakrishnan S, Raney BJ, Richman JM, St John J, Schwartz T, Sethuraman A, Spinks PQ, Storey KB, Thane N, Vinar T, Zimmerman LM, Warren WC, Mardis ER, Wilson RK.
Genome Biol. 2013 Mar 28;14(3):R28. [Epub ahead of print]
PMID: 23537068 [PubMed - as supplied by publisher]
ニシキガメのゲノム報告論文。

The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan
Wang Z, Pascual-Anaya J, Zadissa A, Li W, Niimura Y, Huang Z, Li C, White S, Xiong Z, Fang D, Wang B, Ming Y, Chen Y, Zheng Y, Kuraku S, Pignatelli M, Herrero J, Beal K, Nozawa M, Li Q, Wang J, Zhang H, Yu L, Shigenobu S, Wang J, Liu J, Flicek P, Searle S, Wang J, Kuratani S, Yin Y, Aken B, Zhang G, Irie N.
Nat Genet. 2013 Apr 28;45(6):701-6. doi: 10.1038/ng.2615. Epub 2013 Apr 28.
PMID: 23624526 [PubMed - in process]
スッポンとアオウミガメのゲノム報告論文。

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse
Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E.
Nature. 2013 Jul 4;499(7456):74-8. doi: 10.1038/nature12323. Epub 2013 Jun 26.
PMID: 23803765 [PubMed - in process]
56-78万年前の馬の骨からゲノムを抽出し、解析した論文。比較対象として4万3000年前のウマと、現生の５系統のウマ、モウコノウマ、ロバのゲノムを解読し、比較している。

Ground tit genome reveals avian adaptation to living at high altitudes in the Tibetan plateau
Qu Y, Zhao H, Han N, Zhou G, Song G, Gao B, Tian S, Zhang J, Zhang R, Meng X, Zhang Y, Zhang Y, Zhu X, Wang W, Lambert D, Ericson PG, Subramanian S, Yeung C, Zhu H, Jiang Z, Li R, Lei F.
Nat Commun. 2013 Jul 1;4:2071. doi: 10.1038/ncomms3071.
PMID: 23817352 [PubMed - in process]
ヒメサバクガラスのゲノム報告論文。

Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna
Nakamura Y, Mori K, Saitoh K, Oshima K, Mekuchi M, Sugaya T, Shigenobu Y, Ojima N, Muta S, Fujiwara A, Yasuike M, Oohara I, Hirakawa H, Chowdhury VS, Kobayashi T, Nakajima K, Sano M, Wada T, Tashiro K, Ikeo K, Hattori M, Kuhara S, Gojobori T, Inouye K.
Proc Natl Acad Sci U S A. 2013 Jul 2;110(27):11061-6. doi: 10.1073/pnas.1302051110. Epub 2013 Jun 18.
PMID: 23781100 [PubMed - in process] Free Article
クロマグロのゲノム報告論文。反復配列については何の報告もなし。