ゲノム解読論文まとめ

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
Paterson AH, Wendel JF, Gundlach H, Guo H, Jenkins J, Jin D, Llewellyn D, Showmaker KC, Shu S, Udall J, Yoo MJ, Byers R, Chen W, Doron-Faigenboim A, Duke MV, Gong L, Grimwood J, Grover C, Grupp K, Hu G, Lee TH, Li J, Lin L, Liu T, Marler BS, Page JT, Roberts AW, Romanel E, Sanders WS, Szadkowski E, Tan X, Tang H, Xu C, Wang J, Wang Z, Zhang D, Zhang L, Ashrafi H, Bedon F, Bowers JE, Brubaker CL, Chee PW, Das S, Gingle AR, Haigler CH, Harker D, Hoffmann LV, Hovav R, Jones DC, Lemke C, Mansoor S, ur Rahman M, Rainville LN, Rambani A, Reddy UK, Rong JK, Saranga Y, Scheffler BE, Scheffler JA, Stelly DM, Triplett BA, Van Deynze A, Vaslin MF, Waghmare VN, Walford SA, Wright RJ, Zaki EA, Zhang T, Dennis ES, Mayer KF, Peterson DG, Rokhsar DS, Wang X, Schmutz J.
Nature. 2012 Dec 20;492(7429):423-7. doi: 10.1038/nature11798.
PMID: 23257886 [PubMed - in process]
綿のゲノムをシーケンスし､綿の性質の変化が何に起因しているのかを解析した研究｡綿は過去に倍数化を繰り返した結果､被子植物の祖先の30-36倍体に相当しており、由来の異なるゲノムの間の相同組み換えが綿の性質が大きく変わる場合に貢献していることを示している｡

The genome of Prunus mume
Zhang Q, Chen W, Sun L, Zhao F, Huang B, Yang W, Tao Y, Wang J, Yuan Z, Fan G, Xing Z, Han C, Pan H, Zhong X, Shi W, Liang X, Du D, Sun F, Xu Z, Hao R, Lv T, Lv Y, Zheng Z, Sun M, Luo L, Cai M, Gao Y, Wang J, Yin Y, Xu X, Cheng T, Wang J.
Nat Commun. 2012 Dec 27;3:1318. doi: 10.1038/ncomms2290.
PMID: 23271652 [PubMed - in process] Free PMC Article
梅のゲノムを次世代シーケンサーで読んだ研究。

The draft genome of the carcinogenic human liver fluke Clonorchis sinensis.
Wang X, Chen W, Huang Y, Sun J, Men J, Liu H, Luo F, Guo L, Lv X, Deng C, Zhou C, Fan Y, Li X, Huang L, Hu Y, Liang C, Hu X, Xu J, Yu X.
Genome Biol. 2011 Oct 24;12(10):R107. [Epub ahead of print]
肝吸虫（肝臓ジストマ）のゲノムを解析した論文｡

Comparative Analysis of Bat Genomes Provides Insight into the Evolution of Flight and Immunity
Zhang G, Cowled C, Shi Z, Huang Z, Bishop-Lilly KA, Fang X, Wynne JW, Xiong Z, Baker ML, Zhao W, Tachedjian M, Zhu Y, Zhou P, Jiang X, Ng J, Yang L, Wu L, Xiao J, Feng Y, Chen Y, Sun X, Zhang Y, Marsh GA, Crameri G, Broder CC, Frey KG, Wang LF, Wang J.
Science. 2013 Jan 25;339(6118):456-60. doi: 10.1126/science.1230835. Epub 2012 Dec 20.
PMID: 23258410 [PubMed - in process]
様々な有害な病原体の宿主となりうるコウモリの仲間2種（Pteropus alecto, Myotis davidii）のゲノムを比較解析した論文｡DNA damage checkpointとnuclear factor κB pathwaysの遺伝子群での正の自然選択が空を飛ぶことの起源に関係しているらしい｡

Insights into bilaterian evolution from three spiralian genomes
Simakov O, Marletaz F, Cho SJ, Edsinger-Gonzales E, Havlak P, Hellsten U, Kuo DH, Larsson T, Lv J, Arendt D, Savage R, Osoegawa K, de Jong P, Grimwood J, Chapman JA, Shapiro H, Aerts A, Otillar RP, Terry AY, Boore JL, Grigoriev IV, Lindberg DR, Seaver EC, Weisblat DA, Putnam NH, Rokhsar DS.
Nature. 2013 Jan 24;493(7433):526-31. doi: 10.1038/nature11696. Epub 2012 Dec 19.
PMID: 23254933 [PubMed - in process]
環輪動物3種、軟体動物のLottia gigantea、環形動物のCapitella teletaとHelobdella robustaのゲノムを解析、比較した論文｡まとめて1つの論文になるとは意外です。